publications

2025

1. Hepatic gluconeogenesis and PDK3 upregulation drive cancer cachexia in flies and mice

   Ying Liu, Ezequiel Dantas, Miriam Ferrer, and 8 more authors

   Nature Metabolism, 2025
2. Higher resolution pooled genome-wide CRISPR knockout screening in Drosophila cells using integration and anti-CRISPR (IntAC)

   Raghuvir Viswanatha, Samuel Entwisle, Yanhui Hu, and 6 more authors

   Nature Communications, 2025
3. Protein folding stress transcriptionally reprograms muscle metabolism

   Jacob Paiano, Mujeeb Qadiri, Suhasini Sharma, and 2 more authors

   bioRxiv, 2025
4. FlyRNAi. org 2025 update—expanded resources for new technologies and species

   Yanhui Hu, Aram Comjean, Jonathan Rodiger, and 7 more authors

   Nucleic Acids Research, 2025
5. Cholinergic Signaling Modulates Intestinal Pathophysiology in a Drosophila Model of Cystic Fibrosis

   Elizabeth Lane, Afroditi Petsakou, Ying Liu, and 4 more authors

   bioRxiv, 2025
6. FlyPhoneDB2: A Computational Framework for Analyzing Cell-Cell Communication in Drosophila scRNA-seq Data Integrating AlphaFold-Multimer Predictions

   Mujeeb Qadiri, Ying Liu, Ah-Ram Kim, and 7 more authors

   Computational and Structural Biotechnology Journal, 2025
7. TF2TG: an online resource mining the potential gene targets of transcription factors in Drosophila

   Yanhui Hu, Jonathan Rodiger, Yifang Liu, and 6 more authors

   Genetics, 2025
8. Renal Coenzyme A (CoA) Production Fuels Stem Cell Proliferation and Tumor Growth

   Ting Miao, Ying Liu, Mujeeb Qadiri, and 5 more authors

   bioRxiv, 2025
9. In-situ glial cell-surface proteomics identifies pro-longevity factors in Drosophila

   Madeline P Marques, Bo Sun, Ye-Jin Park, and 8 more authors

   bioRxiv, 2025
10. The epigenetic factor Zrf1 regulates intestinal stem cell proliferation during midgut regeneration

    Joshua Shing Shun Li, Ying Liu, Ah-Ram Kim, and 7 more authors

    PLoS genetics, 2025